EnhancerDB
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  3. rs144390642[chr12:46553092]
Enhancers that have rs144390642[chr12:46553092]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 46542685 46564475 enh14673
Skin (Keratinocyte) Prostate (PC-3) Kidney Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Brain (SK-N-SH) Lung (A549) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Uterus Heart
Transcript factors that have rs144390642[chr12:46553092]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 46552769 46554541 TCF7L2 GTRD no Colon (HCT116) 21540723
chr12 46552835 46554033 ZNF274 GTRD no Cervix (HeLa-S3) 21540724
chr12 46552870 46554001 TCF7L2 GTRD no Colon (HCT116) 21540725
chr12 46552876 46554399 ZNF274 GTRD no Cervix (HeLa-S3) 21540726
chr12 46552912 46553836 ZNF274 GTRD no Cervix (HeLa-S3) 21540727
chr12 46552916 46554028 TCF7L2 GTRD no Colon (HCT116) 21540728
chr12 46552926 46554356 TCF7L2 GTRD no Colon (HCT116) 21540729
chr12 46552963 46553936 ZBTB33 GTRD no Lung (A549) 21540730
chr12 46552981 46553918 ZBTB33 GTRD no Lung (A549) 21540731
chr12 46553011 46553936 TCF7L2 GTRD no Colon (HCT116) 21540732
chr12 46553023 46553889 ZBTB33 GTRD no Lung (A549) 21540733
chr12 46553045 46553921 TCF7L2 GTRD no Colon (HCT116) 21540734
chr12 46553083 46553098 FOXA1 JASPAR yes 120599645
chr12 46553086 46553097 FOXB1 JASPAR yes 120599646
chr12 46553086 46553097 FOXC1 JASPAR yes 120599647
chr12 46553089 46553103 RORA JASPAR yes 120599648
Genes associated with rs144390642[chr12:46553092], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More