EnhancerDB
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  3. rs145016090[chr16:88341278]
Enhancers that have rs145016090[chr16:88341278]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88327201 88357367 enh16902
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Uterus
Transcript factors that have rs145016090[chr16:88341278]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221932
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221933
chr16 88339563 88343230 TCF7L2 GTRD no Colon (HCT116) 108221946
chr16 88339881 88341423 ZNF274 GTRD no Bone Marrow (K562) 108221948
chr16 88339899 88341285 ZNF274 GTRD no Bone Marrow (K562) 108221949
chr16 88340010 88341991 ZNF143 GTRD no Epithelial (MCF-7) 108221951
chr16 88340421 88343363 TCF7L2 GTRD no Colon (HCT116) 108221956
chr16 88341267 88341281 RXRB JASPAR yes 12276544
chr16 88341267 88341281 RXRG JASPAR yes 12276545
chr16 88341267 88341282 NR2C2 JASPAR yes 12276546
chr16 88341273 88341283 SREBF2 JASPAR yes 12276547
chr16 88341278 88341290 MEF2B JASPAR yes 12276548
chr16 88341278 88341290 MEF2D JASPAR yes 12276549
Genes associated with rs145016090[chr16:88341278], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More