EnhancerDB
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Enhancers that have rs146904072[chr19:3338545]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3331365 3352459 enh17861
Cervix (HeLa-S3) Prostate (RWPE1) Ovary Esophagus Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Lung Stomach Muscle (A673) Placenta Colon (HCT116) Breast Thyroid Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs146904072[chr19:3338545]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3338351 3339206 ZNF274 GTRD no Cervix (HeLa-S3) 21838722
chr19 3338351 3339206 ZNF274 GTRD no Cervix (HeLa-S3) 108365454
chr19 3338391 3339062 ZNF274 GTRD no Blood (GM12878) 108365455
chr19 3338392 3338940 ZNF274 GTRD no Blood (GM12878) 108365456
chr19 3338400 3338906 ZNF274 GTRD no Blood (GM12878) 108365457
chr19 3338403 3339081 ZNF274 GTRD no Cervix (HeLa-S3) 21838723
chr19 3338403 3339081 ZNF274 GTRD no Cervix (HeLa-S3) 108365458
chr19 3338409 3338873 ZBTB33 GTRD no Lung (A549) 108365459
chr19 3338428 3338835 TCF7L2 GTRD no Colon (HCT116) 21838724
chr19 3338428 3338835 TCF7L2 GTRD no Colon (HCT116) 108365460
chr19 3338436 3339015 TCF7L2 GTRD no Colon (HCT116) 21838725
chr19 3338436 3339015 TCF7L2 GTRD no Colon (HCT116) 108365461
chr19 3338443 3339088 ZBTB33 GTRD no Lung (A549) 108365462
chr19 3338477 3338965 ZNF143 GTRD no Epithelial (MCF-7) 108365463
chr19 3338493 3339143 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21838726
chr19 3338493 3339143 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108365464
chr19 3338494 3338758 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108365465
chr19 3338524 3339087 ZNF143 GTRD no Epithelial (MCF-7) 108365466
chr19 3338530 3338545 TFAP2C JASPAR yes 112120809
chr19 3338533 3339227 TCF7L2 GTRD no Colon (HCT116) 21838727
chr19 3338533 3339227 TCF7L2 GTRD no Colon (HCT116) 108365467
chr19 3338537 3338556 PAX5 JASPAR yes 112120811
chr19 3338538 3339008 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108365468
chr19 3338545 3338556 E2F6 JASPAR yes 112120812
Genes associated with rs146904072[chr19:3338545], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More