EnhancerDB
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  3. rs1546721[chr6:109625796]
Enhancers that have rs1546721[chr6:109625796]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 109611505 109631621 enh23489
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Brain (SK-N-SH) Bone (Osteoblast) Stomach Placenta Colon (HCT116) Lung (PC-9) Pancreas Uterus Heart
chr6 109625470 109626069 vista53070
VISTA
Transcript factors that have rs1546721[chr6:109625796]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 109625551 109626295 POLR2A UCSC Txn Factor no Conserved 108541252
chr6 109625575 109625851 CEBPB UCSC Txn Factor no Conserved 108541253
chr6 109625611 109626026 TEAD4 UCSC Txn Factor no Conserved 108541254
chr6 109625651 109625897 RUNX3 UCSC Txn Factor no Conserved 108541255
chr6 109625653 109626039 EP300 UCSC Txn Factor no Conserved 108541256
chr6 109625661 109625989 NR2F2 UCSC Txn Factor no Conserved 108541257
chr6 109625662 109626016 PML UCSC Txn Factor no Conserved 108541258
chr6 109625671 109625992 TAL1 UCSC Txn Factor no Conserved 108541259
chr6 109625680 109626036 RCOR1 UCSC Txn Factor no Conserved 108541260
chr6 109625682 109626302 GATA2 UCSC Txn Factor no Conserved 108541261
chr6 109625715 109625964 TRIM28 UCSC Txn Factor no Conserved 108541262
chr6 109625719 109625970 CCNT2 UCSC Txn Factor no Conserved 108541263
chr6 109625732 109625941 STAT5A UCSC Txn Factor no Conserved 108541264
chr6 109625779 109625800 IRF1 JASPAR yes 70415147
chr6 109625779 109625800 IRF1 JASPAR yes 104241837
chr6 109625781 109625796 IRF9 JASPAR yes 70415148
chr6 109625781 109625796 IRF9 JASPAR yes 104241838
chr6 109625783 109625797 STAT1 JASPAR yes 70415149
chr6 109625783 109625797 STAT1 JASPAR yes 104241839
chr6 109625783 109625798 STAT2 JASPAR yes 70415150
chr6 109625783 109625798 STAT2 JASPAR yes 104241840
chr6 109625784 109625796 IRF1 JASPAR yes 70415151
chr6 109625784 109625796 IRF1 JASPAR yes 104241841
Genes associated with rs1546721[chr6:109625796], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More