EnhancerDB
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  3. rs1562300[chr2:224680584]
Enhancers that have rs1562300[chr2:224680584]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 224677744 224699315 enh34325
Skin (Keratinocyte) Prostate (PC-3) Kidney Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Muscle (A673) Colon (HCT116) Thyroid Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs1562300[chr2:224680584]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 224680577 224680592 ZIC3 JASPAR yes 81290406
chr2 224680577 224680592 ZIC4 JASPAR yes 81290407
chr2 224680578 224680592 ZIC1 JASPAR yes 81290408
Genes associated with rs1562300[chr2:224680584], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More