EnhancerDB
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  3. rs172390[chr18:55898199]
Enhancers that have rs172390[chr18:55898199]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55895930 55912515 enh17738
Skin (Keratinocyte) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Colon (HCT116) Thyroid Lung (PC-9) Pancreas Pancreas (Panc1) Muscle (Myotube) Heart
Transcript factors that have rs172390[chr18:55898199]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55898189 55898209 TP53 JASPAR yes 110929934
chr18 55898191 55898211 TP63 JASPAR yes 110929935
chr18 55898192 55898210 TP53 JASPAR yes 110929936
chr18 55898192 55898210 TP63 JASPAR yes 110929937
chr18 55898192 55898210 TP73 JASPAR yes 110929938
chr18 55898193 55898208 TP53 JASPAR yes 110929939
chr18 55898196 55898206 SMAD3 JASPAR yes 110929940
Genes associated with rs172390[chr18:55898199], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More