EnhancerDB
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  3. rs17779649[chr17:70372779]
Enhancers that have rs17779649[chr17:70372779]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 70352230 70433435 enh4580
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs17779649[chr17:70372779]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 70372626 70372962 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 21784375
chr17 70372640 70372996 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21784376
chr17 70372654 70372928 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21784377
chr17 70372661 70372917 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21784378
chr17 70372774 70372784 ALX3 JASPAR yes 55779794
chr17 70372774 70372784 GSX2 JASPAR yes 55779795
chr17 70372774 70372784 MIXL1 JASPAR yes 55779796
chr17 70372774 70372784 MNX1 JASPAR yes 55779797
chr17 70372775 70372783 ISX JASPAR yes 55779798
chr17 70372775 70372783 LHX9 JASPAR yes 55779799
chr17 70372775 70372783 LMX1B JASPAR yes 55779800
chr17 70372775 70372783 PRRX1 JASPAR yes 55779801
chr17 70372775 70372783 RAX2 JASPAR yes 55779802
chr17 70372775 70372783 SHOX JASPAR yes 55779803
chr17 70372775 70372783 UNCX JASPAR yes 55779804
chr17 70372778 70372783 MYB TRANSFAC yes 55779805
Genes associated with rs17779649[chr17:70372779], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More