EnhancerDB
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  3. rs180788322[chr1:205456320]
Enhancers that have rs180788322[chr1:205456320]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205444631 205456855 enh61954
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Stomach Muscle (A673) Colon (HCT116) Breast Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs180788322[chr1:205456320]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205454880 205457852 TCF7L2 GTRD no Colon (HCT116) 21371953
chr1 205455330 205457969 TCF7L2 GTRD no Colon (HCT116) 21371959
chr1 205455489 205457709 TCF7L2 GTRD no Colon (HCT116) 21371960
chr1 205455500 205457642 TCF7L2 GTRD no Colon (HCT116) 21371961
chr1 205455544 205457759 TCF7L2 GTRD no Colon (HCT116) 21371962
chr1 205455874 205456503 TCF7L2 GTRD no Colon (HCT116) 21371963
chr1 205455882 205457874 TCF7L2 GTRD no Colon (HCT116) 21371964
chr1 205455939 205457259 TCF7L2 GTRD no Colon (HCT116) 21371965
chr1 205456019 205457406 ZNF143 GTRD no Epithelial (MCF-7) 21371966
chr1 205456032 205457565 ZNF143 GTRD no Epithelial (MCF-7) 21371967
chr1 205456055 205457770 TCF7L2 GTRD no Colon (HCT116) 21371968
chr1 205456238 205457804 TCF7L2 GTRD no Colon (HCT116) 21371969
chr1 205456248 205457354 ZNF143 GTRD no Epithelial (MCF-7) 21371970
chr1 205456280 205457482 SOX2 GTRD no Neural Stem Cells (H9) 21371971
chr1 205456294 205458021 TCF7L2 GTRD no Colon (HCT116) 21371972
Genes associated with rs180788322[chr1:205456320], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More