EnhancerDB
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  3. rs180822569[chr17:70402030]
Enhancers that have rs180822569[chr17:70402030]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 70352230 70433435 enh4580
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs180822569[chr17:70402030]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 70402025 70402030 TFAP2A TRANSFAC yes 55784100
chr17 70402025 70402031 MZF1 JASPAR yes 55784101
chr17 70402026 70402036 GSC2 JASPAR yes 55784102
chr17 70402026 70402036 GSC JASPAR yes 55784103
chr17 70402027 70402035 RHOXF1 JASPAR yes 55784104
chr17 70402027 70402036 PITX3 JASPAR yes 55784105
Genes associated with rs180822569[chr17:70402030], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More