EnhancerDB
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  3. rs188087951[chr1:108478004]
Enhancers that have rs188087951[chr1:108478004]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 108474065 108488635 enh548
Prostate (PC-3) Epithelial (MCF-7) Blood (T-cell) Lung (PC-9) Esophagus Astrocyte Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Blood (Karpas-422) Muscle (Myoblast) Breast Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs188087951[chr1:108478004]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 108477882 108478472 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21326348
chr1 108477882 108478472 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107817619
chr1 108477937 108478462 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21326349
chr1 108477937 108478462 NFIC UCSC Txn Factor no Conserved 107817620
chr1 108477937 108478462 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107817621
chr1 108477962 108478419 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21326350
chr1 108477962 108478419 RUNX3 UCSC Txn Factor no Conserved 107817622
chr1 108477962 108478419 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107817623
chr1 108477993 108478004 FOXB1 JASPAR yes 31370301
chr1 108477993 108478004 FOXC1 JASPAR yes 31370302
chr1 108477995 108478010 HNF1A JASPAR yes 31370303
chr1 108477996 108478009 HNF1B JASPAR yes 31370304
chr1 108477996 108478010 POU4F1 JASPAR yes 31370305
chr1 108477996 108478012 POU4F2 JASPAR yes 31370306
chr1 108477996 108478012 POU4F3 JASPAR yes 31370307
chr1 108477997 108478433 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21326351
chr1 108477997 108478433 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107817624
chr1 108477999 108478409 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21326352
chr1 108477999 108478409 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107817625
chr1 108478003 108478007 TEAD2 TRANSFAC yes 31370308
Genes associated with rs188087951[chr1:108478004], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More