EnhancerDB
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  3. rs188164912[chr1:172872014]
Enhancers that have rs188164912[chr1:172872014]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs188164912[chr1:172872014]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172870697 172872476 TCF7L2 GTRD no Colon (HCT116) 21350399
chr1 172870800 172872370 TCF7L2 GTRD no Colon (HCT116) 21350401
chr1 172871896 172872306 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21350417
chr1 172871994 172872258 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21350418
chr1 172872005 172872014 SRY JASPAR yes 33163586
Genes associated with rs188164912[chr1:172872014], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More