EnhancerDB
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Enhancers that have rs188497542[chr19:3333959]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3331365 3352459 enh17861
Cervix (HeLa-S3) Prostate (RWPE1) Ovary Esophagus Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Lung Stomach Muscle (A673) Placenta Colon (HCT116) Breast Thyroid Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs188497542[chr19:3333959]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3333648 3334057 TCF7L2 GTRD no Colon (HCT116) 21838711
chr19 3333939 3333960 IRF1 JASPAR yes 112120103
chr19 3333941 3333962 IRF1 JASPAR yes 112120107
chr19 3333945 3333966 IRF1 JASPAR yes 112120108
chr19 3333947 3333962 PRDM1 JASPAR yes 112120109
chr19 3333947 3333962 STAT2 JASPAR yes 112120110
chr19 3333948 3333962 SPIC JASPAR yes 112120111
chr19 3333948 3333962 STAT1 JASPAR yes 112120112
chr19 3333949 3333970 IRF1 JASPAR yes 112120113
chr19 3333950 3333965 FOXP1 JASPAR yes 112120114
chr19 3333950 3333971 IRF1 JASPAR yes 112120115
chr19 3333952 3333967 FOXP1 JASPAR yes 112120116
chr19 3333954 3333969 FOXP1 JASPAR yes 112120117
chr19 3333955 3333970 FOXP1 JASPAR yes 112120118
chr19 3333957 3333972 FOXP1 JASPAR yes 112120119
Genes associated with rs188497542[chr19:3333959], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More