EnhancerDB
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  3. rs188947320[chr1:202012886]
Enhancers that have rs188947320[chr1:202012886]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201996265 202020435 enh12533
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Epithelial (MCF-7) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Muscle (A673)
Transcript factors that have rs188947320[chr1:202012886]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202005343 202013233 ZNF274 GTRD no Cervix (HeLa-S3) 21365535
chr1 202005343 202013233 ZNF274 GTRD no Cervix (HeLa-S3) 107857423
chr1 202008954 202021472 ZBTB33 GTRD no Lung (A549) 107857529
chr1 202009111 202020493 ZBTB33 GTRD no Lung (A549) 107857530
chr1 202011735 202013508 TCF7L2 GTRD no Colon (HCT116) 21365761
chr1 202011874 202014365 TCF7L2 GTRD no Colon (HCT116) 21365763
chr1 202011900 202013986 TCF7L2 GTRD no Colon (HCT116) 21365764
chr1 202012344 202013480 TCF7L2 GTRD no Colon (HCT116) 21365765
chr1 202012454 202014088 TCF7L2 GTRD no Colon (HCT116) 21365767
chr1 202012568 202014020 ZNF143 GTRD no Epithelial (MCF-7) 21365775
chr1 202012570 202013868 ZNF143 GTRD no Epithelial (MCF-7) 21365776
chr1 202012581 202013991 TCF7L2 GTRD no Colon (HCT116) 21365777
chr1 202012644 202013288 ZNF143 GTRD no Epithelial (MCF-7) 21365779
chr1 202012652 202013415 ZNF143 GTRD no Epithelial (MCF-7) 21365780
chr1 202012741 202013512 TCF7L2 GTRD no Colon (HCT116) 21365781
chr1 202012871 202012890 PAX5 JASPAR yes 34545687
chr1 202012880 202012890 SP1 JASPAR yes 34545688
chr1 202012881 202012901 TP63 JASPAR yes 34545689
chr1 202012882 202012900 TP73 JASPAR yes 34545690
Genes associated with rs188947320[chr1:202012886], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More