EnhancerDB
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  3. rs190948253[chr16:88309557]
Enhancers that have rs190948253[chr16:88309557]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88291992 88310485 enh16901
Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Muscle (Myotube) Lung Heart
Transcript factors that have rs190948253[chr16:88309557]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88308342 88310654 ZNF143 GTRD no Epithelial (MCF-7) 21735815
chr16 88308430 88310527 ZNF143 GTRD no Epithelial (MCF-7) 21735816
chr16 88308435 88309601 TCF7L2 GTRD no Colon (HCT116) 21735817
chr16 88308446 88310554 ZNF143 GTRD no Epithelial (MCF-7) 21735818
chr16 88308454 88310527 ZNF143 GTRD no Epithelial (MCF-7) 21735820
chr16 88308477 88310390 ZNF143 GTRD no Epithelial (MCF-7) 21735821
chr16 88308482 88310390 ZNF143 GTRD no Epithelial (MCF-7) 21735822
chr16 88308523 88310733 TCF7L2 GTRD no Colon (HCT116) 21735823
chr16 88308783 88310436 TCF7L2 GTRD no Colon (HCT116) 21735827
chr16 88308827 88310359 TCF7L2 GTRD no Colon (HCT116) 21735829
chr16 88308843 88310355 TCF7L2 GTRD no Colon (HCT116) 21735831
chr16 88309304 88310207 TCF7L2 GTRD no Colon (HCT116) 21735832
chr16 88309362 88310035 TCF7L2 GTRD no Colon (HCT116) 21735833
chr16 88309555 88309566 CDX2 JASPAR yes 12273292
Genes associated with rs190948253[chr16:88309557], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More