EnhancerDB
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  3. rs199930607[chr1:15517256]
Enhancers that have rs199930607[chr1:15517256]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 15498831 15536635 enh11531
Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs199930607[chr1:15517256]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 15517240 15517260 RREB1 JASPAR yes 26968987
chr1 15517245 15517265 RREB1 JASPAR yes 26968988
chr1 15517246 15517267 IRF1 JASPAR yes 26968989
chr1 15517247 15517262 FOXP1 JASPAR yes 26968991
chr1 15517247 15517267 RREB1 JASPAR yes 26968992
chr1 15517248 15517263 STAT2 JASPAR yes 26968993
chr1 15517250 15517262 IRF1 JASPAR yes 26968994
chr1 15517250 15517264 IRF7 JASPAR yes 26968995
chr1 15517250 15517265 IRF9 JASPAR yes 26968996
chr1 15517251 15517271 RREB1 JASPAR yes 26968997
chr1 15517252 15517258 TCF4 TRANSFAC yes 26968998
chr1 15517252 15517267 FOXP1 JASPAR yes 26968999
chr1 15517252 15517267 MEF2C JASPAR yes 26969000
chr1 15517252 15517273 IRF1 JASPAR yes 26969001
chr1 15517253 15517268 RUNX2 JASPAR yes 26969002
chr1 15517254 15517274 RREB1 JASPAR yes 26969003
chr1 15517256 15517268 IRF1 JASPAR yes 26969004
Genes associated with rs199930607[chr1:15517256], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More