EnhancerDB
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  3. rs1999525[chr1:3258901]
Enhancers that have rs1999525[chr1:3258901]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3220368 3259315 enh11429
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1999525[chr1:3258901]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3258891 3258906 TFAP2A JASPAR yes 26282448
chr1 3258893 3258906 TFAP2A JASPAR yes 26282449
chr1 3258893 3258906 TFAP2B JASPAR yes 26282450
chr1 3258893 3258906 TFAP2C JASPAR yes 26282451
chr1 3258898 3258907 THAP1 JASPAR yes 26282452
chr1 3258901 3258905 LFA1 TRANSFAC yes 26282453
Genes associated with rs1999525[chr1:3258901], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More