EnhancerDB
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  3. rs1999574[chr1:40288051]
Enhancers that have rs1999574[chr1:40288051]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 40278465 40303035 enh11766
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Thymus Epithelial (MCF-7)
Transcript factors that have rs1999574[chr1:40288051]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 40288044 40288054 GCM2 JASPAR yes 28293468
chr1 40288044 40288055 GCM1 JASPAR yes 28293469
chr1 40288051 40288063 GLI2 JASPAR yes 28293470
Genes associated with rs1999574[chr1:40288051], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 40915774 40929390 + ZFP69B ENSG00000187801.10 40915774 627723 Esophagus 0.216771 564