EnhancerDB
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  3. rs199961990[chr17:53506278]
Enhancers that have rs199961990[chr17:53506278]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs199961990[chr17:53506278]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53506258 53506278 RREB1 JASPAR yes 54849013
chr17 53506261 53506281 RREB1 JASPAR yes 54849014
chr17 53506264 53506284 RREB1 JASPAR yes 54849015
chr17 53506267 53506287 RREB1 JASPAR yes 54849016
Genes associated with rs199961990[chr17:53506278], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More