EnhancerDB
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  3. rs200301293[chr1:27452052]
Enhancers that have rs200301293[chr1:27452052]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27433689 27453155 enh170
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs200301293[chr1:27452052]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27452043 27452057 PLAG1 JASPAR yes 27679367
chr1 27452044 27452058 PLAG1 JASPAR yes 27679368
chr1 27452050 27452063 TFAP2A JASPAR yes 27679369
chr1 27452050 27452063 TFAP2B JASPAR yes 27679370
chr1 27452050 27452063 TFAP2C JASPAR yes 27679371
chr1 27452052 27452063 TFAP2A JASPAR yes 27679372
chr1 27452052 27452063 TFAP2B JASPAR yes 27679373
chr1 27452052 27452063 TFAP2C JASPAR yes 27679374
Genes associated with rs200301293[chr1:27452052], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 27668513 27680421 + SYTL1 ENSG00000142765.13 27668513 216461 Esophagus 0.393833 387