EnhancerDB
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Enhancers that have rs200334329[chr17:53518210]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs200334329[chr17:53518210]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53518198 53518218 RREB1 JASPAR yes 54851042
chr17 53518203 53518215 IRF1 JASPAR yes 54851043
chr17 53518203 53518223 RREB1 JASPAR yes 54851044
chr17 53518204 53518225 IRF1 JASPAR yes 54851045
chr17 53518205 53518211 TCF4 TRANSFAC yes 54851046
chr17 53518205 53518220 FOXP1 JASPAR yes 54851047
chr17 53518208 53518220 IRF1 JASPAR yes 54851048
chr17 53518208 53518228 RREB1 JASPAR yes 54851049
chr17 53518209 53518230 IRF1 JASPAR yes 54851050
chr17 53518210 53518216 TCF4 TRANSFAC yes 54851051
chr17 53518210 53518225 FOXP1 JASPAR yes 54851052
Genes associated with rs200334329[chr17:53518210], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More