EnhancerDB
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  3. rs200523873[chr1:202060871]
Enhancers that have rs200523873[chr1:202060871]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 202022729 202063855 enh12534
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs200523873[chr1:202060871]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202060316 202061099 ZNF143 GTRD no Epithelial (MCF-7) 21367010
chr1 202060799 202061159 ZNF274 GTRD no Bone Marrow (K562) 21367013
chr1 202060813 202061266 ZNF274 GTRD no Cervix (HeLa-S3) 21367014
chr1 202060829 202061177 ZNF274 GTRD no Bone Marrow (K562) 21367015
chr1 202060851 202060872 IRF1 JASPAR yes 34552506
chr1 202060852 202060873 ZNF263 JASPAR yes 34552507
chr1 202060853 202060874 IRF1 JASPAR yes 34552508
chr1 202060855 202060876 ZNF263 JASPAR yes 34552509
chr1 202060857 202060878 IRF1 JASPAR yes 34552510
chr1 202060859 202060874 PRDM1 JASPAR yes 34552511
chr1 202060859 202060874 STAT2 JASPAR yes 34552512
chr1 202060859 202060880 ZNF263 JASPAR yes 34552513
chr1 202060860 202060874 SPIC JASPAR yes 34552514
chr1 202060860 202060874 STAT1 JASPAR yes 34552515
chr1 202060861 202060875 IRF7 JASPAR yes 34552516
chr1 202060861 202060875 IRF8 JASPAR yes 34552517
chr1 202060861 202060876 IRF9 JASPAR yes 34552518
chr1 202060861 202060882 IRF1 JASPAR yes 34552519
chr1 202060863 202060884 IRF1 JASPAR yes 34552520
chr1 202060863 202060884 ZNF263 JASPAR yes 34552521
chr1 202060864 202060885 ZNF263 JASPAR yes 34552522
chr1 202060867 202060888 IRF1 JASPAR yes 34552523
chr1 202060871 202060892 IRF1 JASPAR yes 34552524
Genes associated with rs200523873[chr1:202060871], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More