EnhancerDB
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  3. rs2009227[chr17:53523340]
Enhancers that have rs2009227[chr17:53523340]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs2009227[chr17:53523340]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53523220 53523357 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21772648
chr17 53523331 53523340 PITX3 JASPAR yes 54851864
chr17 53523331 53523341 GSC2 JASPAR yes 54851865
chr17 53523331 53523341 GSC JASPAR yes 54851866
chr17 53523332 53523340 OTX1 JASPAR yes 54851867
chr17 53523333 53523354 LUN1 TRANSFAC yes 54851868
Genes associated with rs2009227[chr17:53523340], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More