EnhancerDB
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  3. rs201391200[chr17:53518225]
Enhancers that have rs201391200[chr17:53518225]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs201391200[chr17:53518225]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53518204 53518225 IRF1 JASPAR yes 54851045
chr17 53518208 53518228 RREB1 JASPAR yes 54851049
chr17 53518209 53518230 IRF1 JASPAR yes 54851050
chr17 53518210 53518225 FOXP1 JASPAR yes 54851052
chr17 53518213 53518225 IRF1 JASPAR yes 54851053
chr17 53518213 53518233 RREB1 JASPAR yes 54851054
chr17 53518214 53518235 IRF1 JASPAR yes 54851055
chr17 53518215 53518230 FOXP1 JASPAR yes 54851057
chr17 53518218 53518230 IRF1 JASPAR yes 54851058
chr17 53518218 53518238 RREB1 JASPAR yes 54851059
chr17 53518219 53518240 IRF1 JASPAR yes 54851060
chr17 53518220 53518226 TCF4 TRANSFAC yes 54851061
chr17 53518220 53518235 FOXP1 JASPAR yes 54851062
chr17 53518223 53518235 IRF1 JASPAR yes 54851063
chr17 53518223 53518243 RREB1 JASPAR yes 54851064
chr17 53518224 53518245 IRF1 JASPAR yes 54851065
chr17 53518225 53518231 TCF4 TRANSFAC yes 54851066
chr17 53518225 53518240 FOXP1 JASPAR yes 54851067
Genes associated with rs201391200[chr17:53518225], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More