EnhancerDB
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  3. rs201527465[chr17:78842961]
Enhancers that have rs201527465[chr17:78842961]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 78831119 78853255 enh4640
Skin (Keratinocyte) Brain (SK-N-SH) Blood (T-cell) Bone (Osteoblast) Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs201527465[chr17:78842961]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 78842689 78844166 ZBTB33 GTRD no Lung (A549) 108307924
chr17 78842716 78844149 ZBTB33 GTRD no Lung (A549) 108307925
chr17 78842730 78844893 ZNF274 GTRD no Blood (GM12878) 108307926
chr17 78842730 78844893 ZNF274 GTRD no Blood (GM12878) 108307927
chr17 78842781 78843905 ZNF274 GTRD no Bone Marrow (K562) 108307928
chr17 78842834 78844080 ZNF274 GTRD no Cervix (HeLa-S3) 108307929
chr17 78842860 78844060 ZNF143 GTRD no Epithelial (MCF-7) 21797440
chr17 78842860 78844060 ZNF143 GTRD no Epithelial (MCF-7) 108307930
chr17 78842872 78844072 TCF7L2 GTRD no Colon (HCT116) 21797441
chr17 78842872 78844072 TCF7L2 GTRD no Colon (HCT116) 108307931
chr17 78842875 78843828 ZNF274 GTRD no Liver (HepG2) 108307932
chr17 78842879 78843778 ZNF274 GTRD no Blood (GM12878) 108307933
chr17 78842890 78843855 ZNF274 GTRD no Bone Marrow (K562) 108307934
chr17 78842891 78843798 ZBTB33 GTRD no Lung (A549) 108307935
chr17 78842903 78844044 ZNF143 GTRD no Epithelial (MCF-7) 21797442
chr17 78842903 78844044 ZNF143 GTRD no Epithelial (MCF-7) 108307936
chr17 78842905 78843692 ZNF143 GTRD no Epithelial (MCF-7) 21797443
chr17 78842905 78843692 ZNF143 GTRD no Epithelial (MCF-7) 108307937
chr17 78842906 78843934 ZBTB33 GTRD no Lung (A549) 108307938
chr17 78842907 78843941 ZNF143 GTRD no Epithelial (MCF-7) 21797444
chr17 78842907 78843941 ZNF143 GTRD no Epithelial (MCF-7) 108307939
chr17 78842910 78844948 ZBTB33 GTRD no Lung (A549) 108307940
chr17 78842910 78844948 ZBTB33 GTRD no Lung (A549) 108307941
chr17 78842912 78844921 TCF7L2 GTRD no Colon (HCT116) 21797445
chr17 78842912 78844921 TCF7L2 GTRD no Colon (HCT116) 108307942
chr17 78842912 78844921 TCF7L2 GTRD no Colon (HCT116) 108307943
chr17 78842916 78843914 ZNF143 GTRD no Epithelial (MCF-7) 21797446
chr17 78842916 78843914 ZNF143 GTRD no Epithelial (MCF-7) 108307944
chr17 78842919 78844853 TCF7L2 GTRD no Colon (HCT116) 21797447
chr17 78842919 78844853 TCF7L2 GTRD no Colon (HCT116) 108307945
chr17 78842919 78844853 TCF7L2 GTRD no Colon (HCT116) 108307946
chr17 78842924 78843781 ZNF274 GTRD no Liver (HepG2) 108307947
chr17 78842925 78843837 ZNF143 GTRD no Epithelial (MCF-7) 21797448
chr17 78842925 78843837 ZNF143 GTRD no Epithelial (MCF-7) 108307948
chr17 78842940 78843686 ZNF274 GTRD no Liver (HepG2) 108307949
chr17 78842945 78842966 IRF1 JASPAR yes 56287669
chr17 78842945 78843767 ZNF143 GTRD no Epithelial (MCF-7) 21797449
chr17 78842945 78843767 ZNF143 GTRD no Epithelial (MCF-7) 108307950
chr17 78842950 78842971 IRF1 JASPAR yes 56287670
chr17 78842953 78843898 ZNF143 GTRD no Epithelial (MCF-7) 21797450
chr17 78842953 78843898 ZNF143 GTRD no Epithelial (MCF-7) 108307951
chr17 78842953 78843937 ZNF274 GTRD no Liver (HepG2) 108307952
chr17 78842956 78842962 TCF4 TRANSFAC yes 56287672
chr17 78842956 78842971 FOXP1 JASPAR yes 56287673
chr17 78842957 78842968 FOXP2 JASPAR yes 56287674
chr17 78842957 78842969 FOXC2 JASPAR yes 56287675
chr17 78842958 78842969 FOXC1 JASPAR yes 56287676
chr17 78842958 78842973 FOXP1 JASPAR yes 56287677
chr17 78842960 78842975 FOXP1 JASPAR yes 56287678
Genes associated with rs201527465[chr17:78842961], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More