EnhancerDB
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  3. rs2172704[chr1:220909300]
Enhancers that have rs2172704[chr1:220909300]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 220903525 220910295 enh941
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Ovary Lung (PC-9) Astrocyte Bone (Osteoblast) Lung Stomach Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs2172704[chr1:220909300]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 220908446 220909407 ZNF143 GTRD no Epithelial (MCF-7) 21381829
chr1 220908530 220909322 ZNF274 GTRD no Cervix (HeLa-S3) 21381830
chr1 220909285 220909302 RARA JASPAR yes 35506875
chr1 220909285 220909302 RXRA JASPAR yes 35506876
chr1 220909292 220909302 RORA JASPAR yes 35506878
chr1 220909293 220909304 ESRRA JASPAR yes 35506879
chr1 220909293 220909304 ESRRB JASPAR yes 35506880
chr1 220909293 220909306 NR2F1 JASPAR yes 35506881
chr1 220909295 220909303 NR4A2 JASPAR yes 35506882
chr1 220909297 220909301 ESR1 TRANSFAC yes 35506883
Genes associated with rs2172704[chr1:220909300], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More