EnhancerDB
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  3. rs2238580[chr19:949284]
Enhancers that have rs2238580[chr19:949284]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 927725 963215 enh4948
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung Blood (GM12878) Stomach Placenta Colon (HCT116) Thyroid Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Heart
Transcript factors that have rs2238580[chr19:949284]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 946664 950045 ZNF274 GTRD no Blood (GM12878) 21830750
chr19 946664 950045 ZNF274 GTRD no Blood (GM12878) 108348405
chr19 947645 950042 TCF7L2 GTRD no Colon (HCT116) 21830832
chr19 947645 950042 TCF7L2 GTRD no Colon (HCT116) 108348492
chr19 948028 949738 TCF7L2 GTRD no Colon (HCT116) 21830887
chr19 948028 949738 TCF7L2 GTRD no Colon (HCT116) 108348552
chr19 949274 949284 NFIA JASPAR yes 111986076
chr19 949280 949295 TFAP2C JASPAR yes 111986078
chr19 949282 949296 EBF1 JASPAR yes 111986079
chr19 949283 949294 EBF1 JASPAR yes 111986080
chr19 949283 949297 PLAG1 JASPAR yes 111986081
Genes associated with rs2238580[chr19:949284], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More