EnhancerDB
  1. Home
  2. SNP
  3. rs2288316[chr1:55334214]
Enhancers that have rs2288316[chr1:55334214]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55319988 55335735 enh370
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Liver Astrocyte Bone (Osteoblast) Lung (A549) Stomach Placenta Colon (HCT116) Adrenal Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Epithelial (MCF-7)
Transcript factors that have rs2288316[chr1:55334214]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55334204 55334215 CDX2 JASPAR yes 29002768
chr1 55334205 55334215 MNX1 JASPAR yes 29002769
chr1 55334205 55334216 HOXA10 JASPAR yes 29002770
chr1 55334206 55334215 CDX1 JASPAR yes 29002771
chr1 55334206 55334216 HOXA13 JASPAR yes 29002772
chr1 55334206 55334216 HOXB13 JASPAR yes 29002773
chr1 55334206 55334216 HOXC10 JASPAR yes 29002774
chr1 55334206 55334216 HOXD13 JASPAR yes 29002775
chr1 55334209 55334230 IRF1 JASPAR yes 29002776
chr1 55334210 55334216 TBP TRANSFAC yes 29002777
chr1 55334213 55334228 STAT2 JASPAR yes 29002778
Genes associated with rs2288316[chr1:55334214], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More