EnhancerDB
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  3. rs2401948[chr16:1340854]
Enhancers that have rs2401948[chr16:1340854]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 1326605 1349655 enh16494
Astrocyte Colon (HCT116) Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs2401948[chr16:1340854]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 1337449 1345452 ZNF143 GTRD no Epithelial (MCF-7) 21684544
chr16 1337449 1345452 ZNF143 GTRD no Epithelial (MCF-7) 108171314
chr16 1337449 1345452 ZNF143 GTRD no Epithelial (MCF-7) 108171315
chr16 1337449 1345452 ZNF143 GTRD no Epithelial (MCF-7) 108171316
chr16 1340356 1341041 ZNF274 GTRD no Blood (GM12878) 108171332
chr16 1340678 1341116 ZNF274 GTRD no Blood (GM12878) 108171333
chr16 1340720 1341910 TCF7L2 GTRD no Colon (HCT116) 21684582
chr16 1340720 1341910 TCF7L2 GTRD no Colon (HCT116) 108171334
chr16 1340787 1341443 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21684583
chr16 1340787 1341443 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108171335
chr16 1340801 1345571 TCF7L2 GTRD no Colon (HCT116) 21684584
chr16 1340801 1345571 TCF7L2 GTRD no Colon (HCT116) 108171336
chr16 1340801 1345571 TCF7L2 GTRD no Colon (HCT116) 108171337
chr16 1340827 1341227 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108171338
chr16 1340838 1340859 ZNF263 JASPAR yes 9148630
chr16 1340845 1340862 ESR1 JASPAR yes 9148633
chr16 1340849 1340858 RUNX2 JASPAR yes 9148634
Genes associated with rs2401948[chr16:1340854], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More