EnhancerDB
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  3. rs2420850[chr19:14475084]
Enhancers that have rs2420850[chr19:14475084]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 14470665 14486095 enh5020
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs2420850[chr19:14475084]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 14470343 14477749 TCF7L2 GTRD no Colon (HCT116) 21853187
chr19 14470343 14477749 TCF7L2 GTRD no Colon (HCT116) 108391247
chr19 14470343 14477749 TCF7L2 GTRD no Colon (HCT116) 108391248
chr19 14471256 14476330 TCF7L2 GTRD no Colon (HCT116) 21853193
chr19 14471256 14476330 TCF7L2 GTRD no Colon (HCT116) 108391249
chr19 14471256 14476330 TCF7L2 GTRD no Colon (HCT116) 108391250
chr19 14471468 14477141 ZNF274 GTRD no Blood (GM12878) 108391257
chr19 14471468 14477141 ZNF274 GTRD no Blood (GM12878) 108391258
chr19 14473264 14476068 TCF7L2 GTRD no Colon (HCT116) 21853288
chr19 14473264 14476068 TCF7L2 GTRD no Colon (HCT116) 108391271
chr19 14473264 14476068 TCF7L2 GTRD no Colon (HCT116) 108391272
chr19 14474188 14477396 ZNF274 GTRD no Cervix (HeLa-S3) 21853292
chr19 14474188 14477396 ZNF274 GTRD no Cervix (HeLa-S3) 108391286
chr19 14474251 14475613 ZBTB33 GTRD no Lung (A549) 108391287
chr19 14474270 14475954 ZBTB33 GTRD no Lung (A549) 108391289
chr19 14474510 14477703 TCF7L2 GTRD no Colon (HCT116) 21853317
chr19 14474573 14477435 ZNF143 GTRD no Epithelial (MCF-7) 21853320
chr19 14474635 14475408 ZNF143 GTRD no Epithelial (MCF-7) 21853321
chr19 14474643 14475644 ZNF143 GTRD no Epithelial (MCF-7) 21853322
chr19 14474739 14475916 ZNF274 GTRD no Bone Marrow (K562) 21853323
chr19 14474742 14476042 TCF7L2 GTRD no Colon (HCT116) 21853324
chr19 14474770 14477079 ZNF274 GTRD no Bone Marrow (K562) 21853325
chr19 14474781 14475770 ZNF274 GTRD no Bone Marrow (K562) 21853326
chr19 14474787 14476135 ZNF274 GTRD no Bone Marrow (K562) 21853327
chr19 14474791 14475766 ZNF274 GTRD no Bone Marrow (K562) 21853328
chr19 14474834 14475734 ZNF274 GTRD no Bone Marrow (K562) 21853329
chr19 14474895 14475872 ZNF274 GTRD no Bone Marrow (K562) 21853330
chr19 14474898 14475648 TCF7L2 GTRD no Colon (HCT116) 21853331
chr19 14474906 14475852 TCF7L2 GTRD no Colon (HCT116) 21853332
chr19 14474907 14478714 ZNF274 GTRD no Bone Marrow (K562) 21853333
chr19 14474941 14475640 ZNF143 GTRD no Epithelial (MCF-7) 21853334
chr19 14474944 14475908 TCF7L2 GTRD no Colon (HCT116) 21853335
chr19 14474956 14475712 ZNF143 GTRD no Epithelial (MCF-7) 21853336
chr19 14474959 14476209 ZNF274 GTRD no Bone Marrow (K562) 21853337
chr19 14474965 14475281 ZNF274 GTRD no Bone Marrow (K562) 21853338
chr19 14474975 14475785 ZNF274 GTRD no Bone Marrow (K562) 21853339
chr19 14474994 14475474 ZNF274 GTRD no Bone Marrow (K562) 21853340
chr19 14474994 14475849 ZNF274 GTRD no Bone Marrow (K562) 21853341
chr19 14474995 14476250 TCF7L2 GTRD no Colon (HCT116) 21853342
chr19 14474998 14475751 ZNF274 GTRD no Bone Marrow (K562) 21853343
chr19 14475025 14475867 ZNF274 GTRD no Bone Marrow (K562) 21853344
chr19 14475034 14475595 ZNF274 GTRD no Bone Marrow (K562) 21853345
chr19 14475036 14476265 ZNF274 GTRD no Bone Marrow (K562) 21853346
chr19 14475038 14475782 ZNF274 GTRD no Bone Marrow (K562) 21853347
chr19 14475063 14475691 ZNF274 GTRD no Bone Marrow (K562) 21853348
chr19 14475077 14475619 ZNF274 GTRD no Bone Marrow (K562) 21853349
chr19 14475079 14475732 ZNF274 GTRD no Bone Marrow (K562) 21853350
chr19 14475080 14475092 HINFP JASPAR yes 112566131
Genes associated with rs2420850[chr19:14475084], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More