EnhancerDB
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  3. rs2544027[chr12:48216529]
Enhancers that have rs2544027[chr12:48216529]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 48214553 48225280 enh14688
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (A673) Heart
Transcript factors that have rs2544027[chr12:48216529]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 48216517 48216536 RFX2 JASPAR yes 120719482
chr12 48216519 48216534 RFX5 JASPAR yes 120719484
chr12 48216529 48216534 TFAP2A TRANSFAC yes 120719485
chr12 48216529 48216535 MZF1 JASPAR yes 120719486
Genes associated with rs2544027[chr12:48216529], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 48722763 48724062 + H1FNT ENSG00000187166.1 48722763 506234 Esophagus 0.187756 11996