EnhancerDB
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  3. rs2724398[chr1:207993699]
Enhancers that have rs2724398[chr1:207993699]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 207976785 208007638 enh901
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs2724398[chr1:207993699]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 207993104 207994145 ZNF274 GTRD no Bone Marrow (K562) 21374133
chr1 207993138 207994071 ZBTB33 GTRD no Lung (A549) 21374134
chr1 207993149 207994107 ZNF274 GTRD no Cervix (HeLa-S3) 21374135
chr1 207993241 207994113 ZNF274 GTRD no Bone Marrow (K562) 21374136
chr1 207993241 207994121 ZNF274 GTRD no Bone Marrow (K562) 21374137
chr1 207993242 207994125 ZNF274 GTRD no Bone Marrow (K562) 21374138
chr1 207993257 207994193 ZBTB33 GTRD no Lung (A549) 21374139
chr1 207993263 207994265 ZNF143 GTRD no Epithelial (MCF-7) 21374140
chr1 207993273 207994006 ZNF274 GTRD no Bone Marrow (K562) 21374141
chr1 207993285 207993977 ZNF274 GTRD no Bone Marrow (K562) 21374142
chr1 207993289 207994236 ZNF143 GTRD no Epithelial (MCF-7) 21374143
chr1 207993297 207994019 ZNF274 GTRD no Blood (GM12878) 21374144
chr1 207993326 207993969 ZNF274 GTRD no Bone Marrow (K562) 21374145
chr1 207993351 207994028 ZNF274 GTRD no Blood (GM12878) 21374146
chr1 207993351 207994057 ZNF274 GTRD no Blood (GM12878) 21374147
chr1 207993365 207993986 ZNF143 GTRD no Epithelial (MCF-7) 21374148
chr1 207993394 207993969 ZNF274 GTRD no Bone Marrow (K562) 21374149
chr1 207993400 207993947 ZNF274 GTRD no Blood (GM12878) 21374150
chr1 207993411 207993992 ZNF143 GTRD no Epithelial (MCF-7) 21374151
chr1 207993425 207993834 ZBTB33 GTRD no Lung (A549) 21374152
chr1 207993425 207993955 ZBTB33 GTRD no Lung (A549) 21374153
chr1 207993453 207993952 ZNF143 GTRD no Epithelial (MCF-7) 21374154
chr1 207993457 207993930 ZNF143 GTRD no Epithelial (MCF-7) 21374155
chr1 207993460 207993951 ZNF274 GTRD no Cervix (HeLa-S3) 21374156
chr1 207993462 207993859 ZNF143 GTRD no Epithelial (MCF-7) 21374157
chr1 207993462 207993915 CTCF GTRD no Lung 21374158
chr1 207993462 207994081 ZBTB33 GTRD no Lung (A549) 21374159
chr1 207993474 207993914 ZNF143 GTRD no Epithelial (MCF-7) 21374160
chr1 207993477 207993991 ZNF143 GTRD no Epithelial (MCF-7) 21374161
chr1 207993479 207994097 ZNF274 GTRD no Bone Marrow (K562) 21374162
chr1 207993489 207993972 ZNF274 GTRD no Blood (GM12878) 21374163
chr1 207993489 207994118 ZBTB33 GTRD no Lung (A549) 21374164
chr1 207993498 207993821 ZNF274 GTRD no Bone Marrow (K562) 21374165
chr1 207993505 207994012 ZNF274 GTRD no Bone Marrow (K562) 21374166
chr1 207993518 207993973 ZNF143 GTRD no Epithelial (MCF-7) 21374167
chr1 207993526 207993816 ZNF274 GTRD no Bone Marrow (K562) 21374168
chr1 207993530 207993881 ZNF274 GTRD no Bone Marrow (K562) 21374169
chr1 207993543 207993893 ZNF274 GTRD no Cervix (HeLa-S3) 21374170
chr1 207993570 207993873 TCF7L2 GTRD no Colon (HCT116) 21374171
chr1 207993695 207993699 H1TF2 TRANSFAC yes 34878563
chr1 207993695 207993699 NFE TRANSFAC yes 34878564
chr1 207993695 207993699 SRF TRANSFAC yes 34878565
Genes associated with rs2724398[chr1:207993699], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 207925402 207968858 + CD46 ENSG00000117335.14 207925402 24841 Pancreas 0.0668327 1802