EnhancerDB
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  3. rs28479691[chr1:3463228]
Enhancers that have rs28479691[chr1:3463228]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3448190 3482098 enh11432
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Brain (SK-N-SH) Esophagus Astrocyte Stomach Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs28479691[chr1:3463228]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3463214 3463233 RFX2 JASPAR yes 26294573
chr1 3463228 3463242 PLAG1 JASPAR yes 26294574
chr1 3463228 3464117 TCF7L2 GTRD no Colon (HCT116) 107801864
Genes associated with rs28479691[chr1:3463228], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 3370990 3397677 + ARHGEF16 ENSG00000130762.10 3370990 65551 Uterus 0.405255 75