EnhancerDB
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  3. rs2942140[chr1:204388533]
Enhancers that have rs2942140[chr1:204388533]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204381705 204391743 enh12582
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Placenta Colon (HCT116) Pancreas Neural Stem Cells (H9)
chr1 204388302 204388627 vista4688
VISTA
Transcript factors that have rs2942140[chr1:204388533]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204388097 204388567 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107860229
chr1 204388103 204388579 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370587
chr1 204388103 204388579 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860230
chr1 204388135 204388651 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370588
chr1 204388135 204388651 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860231
chr1 204388177 204388581 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370589
chr1 204388177 204388581 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860232
chr1 204388200 204388596 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370590
chr1 204388200 204388596 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860233
chr1 204388211 204388655 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107860234
chr1 204388219 204388563 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370591
chr1 204388219 204388563 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860235
chr1 204388225 204388585 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370592
chr1 204388225 204388585 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860236
chr1 204388239 204388623 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370593
chr1 204388239 204388623 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860237
chr1 204388282 204388658 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370594
chr1 204388282 204388658 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860238
chr1 204388283 204388613 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370595
chr1 204388283 204388613 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860239
chr1 204388309 204388573 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370596
chr1 204388309 204388573 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107860240
chr1 204388523 204388536 EOMES JASPAR yes 34700805
chr1 204388523 204388536 EOMES JASPAR yes 118438239
chr1 204388525 204388535 TBR1 JASPAR yes 34700807
chr1 204388525 204388535 TBR1 JASPAR yes 118438241
chr1 204388525 204388536 TBX20 JASPAR yes 34700808
chr1 204388525 204388536 TBX2 JASPAR yes 34700809
chr1 204388525 204388536 TBX20 JASPAR yes 118438242
chr1 204388525 204388536 TBX2 JASPAR yes 118438243
chr1 204388526 204388536 TBX21 JASPAR yes 34700810
chr1 204388526 204388536 TBX21 JASPAR yes 118438244
chr1 204388527 204388535 MGA JASPAR yes 34700811
chr1 204388527 204388535 TBX1 JASPAR yes 34700812
chr1 204388527 204388535 MGA JASPAR yes 118438245
chr1 204388527 204388535 TBX1 JASPAR yes 118438246
Genes associated with rs2942140[chr1:204388533], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More