EnhancerDB
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  3. rs2972275[chr16:4989540]
Enhancers that have rs2972275[chr16:4989540]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 4988771 5002255 enh16521
Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Heart
Transcript factors that have rs2972275[chr16:4989540]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 4989525 4989541 POU4F3 JASPAR yes 9292421
chr16 4989526 4989542 POU4F2 JASPAR yes 9292434
chr16 4989526 4989542 POU4F3 JASPAR yes 9292435
chr16 4989528 4989542 POU4F1 JASPAR yes 9292438
chr16 4989528 4989543 HNF1A JASPAR yes 9292439
chr16 4989529 4989542 HNF1B JASPAR yes 9292443
chr16 4989536 4989548 FOXC2 JASPAR yes 9292452
chr16 4989538 4989542 YY1 TRANSFAC yes 9292453
Genes associated with rs2972275[chr16:4989540], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More