EnhancerDB
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  3. rs34800389[chr17:39939546]
Enhancers that have rs34800389[chr17:39939546]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39926525 39940665 enh17154
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Esophagus Astrocyte Lung Placenta Colon (HCT116) Uterus Thyroid Pancreas (Panc1) Lung (PC-9) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs34800389[chr17:39939546]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39939534 39939554 RREB1 JASPAR yes 54275965
chr17 39939534 39939555 IRF1 JASPAR yes 54275966
chr17 39939535 39939556 IRF1 JASPAR yes 54275967
chr17 39939540 39939561 IRF1 JASPAR yes 54275968
chr17 39939541 39939547 TCF4 TRANSFAC yes 54275969
chr17 39939541 39939556 FOXP1 JASPAR yes 54275970
chr17 39939541 39939562 IRF1 JASPAR yes 54275971
chr17 39939542 39939553 FOXP2 JASPAR yes 54275972
chr17 39939542 39939554 FOXC2 JASPAR yes 54275973
chr17 39939542 39939557 STAT2 JASPAR yes 54275974
chr17 39939543 39939558 FOXP1 JASPAR yes 54275975
chr17 39939545 39939560 FOXP1 JASPAR yes 54275976
chr17 39939546 39939561 FOXP1 JASPAR yes 54275977
Genes associated with rs34800389[chr17:39939546], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More