EnhancerDB
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  3. rs3834580[chr17:53527673]
Enhancers that have rs3834580[chr17:53527673]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs3834580[chr17:53527673]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53527410 53527759 ZNF143 GTRD no Epithelial (MCF-7) 21772686
chr17 53527418 53528033 ZNF143 GTRD no Epithelial (MCF-7) 21772687
chr17 53527478 53527794 ZNF143 GTRD no Epithelial (MCF-7) 21772688
chr17 53527481 53527839 ZNF274 GTRD no Cervix (HeLa-S3) 21772689
chr17 53527657 53527678 IRF1 JASPAR yes 54852596
chr17 53527661 53527676 STAT2 JASPAR yes 54852597
chr17 53527662 53527676 TCF7L2 JASPAR yes 54852598
chr17 53527663 53527684 IRF1 JASPAR yes 54852599
chr17 53527667 53527682 FOXP1 JASPAR yes 54852601
chr17 53527670 53527688 NR3C1 JASPAR yes 54852602
Genes associated with rs3834580[chr17:53527673], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More