EnhancerDB
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  3. rs3904243[chr1:41574852]
Enhancers that have rs3904243[chr1:41574852]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41570885 41578942 enh11781
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Esophagus Astrocyte Liver Stomach Muscle (A673) Placenta Colon (HCT116) Breast Thyroid Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
Transcript factors that have rs3904243[chr1:41574852]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41574842 41574853 PHOX2A JASPAR yes 28363749
chr1 41574842 41574853 PROP1 JASPAR yes 28363750
chr1 41574844 41574855 HOXA10 JASPAR yes 28363752
chr1 41574845 41574855 ALX3 JASPAR yes 28363753
chr1 41574845 41574855 GSX2 JASPAR yes 28363754
chr1 41574845 41574855 HOXB2 JASPAR yes 28363755
chr1 41574845 41574855 MNX1 JASPAR yes 28363756
chr1 41574846 41574854 LMX1A JASPAR yes 28363757
chr1 41574846 41574854 LMX1B JASPAR yes 28363758
chr1 41574846 41574854 NKX6-1 JASPAR yes 28363759
chr1 41574846 41574854 NKX6-2 JASPAR yes 28363760
chr1 41574846 41574854 VAX1 JASPAR yes 28363761
chr1 41574846 41574854 VAX2 JASPAR yes 28363762
chr1 41574846 41574854 VSX1 JASPAR yes 28363763
chr1 41574846 41574854 VSX2 JASPAR yes 28363764
chr1 41574846 41574856 POU6F2 JASPAR yes 28363765
Genes associated with rs3904243[chr1:41574852], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More