EnhancerDB
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  3. rs398019588[chr12:52423472]
Enhancers that have rs398019588[chr12:52423472]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52415565 52430755 enh2354
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Blood (T-cell) Blood (OCI-LY7) Stomach Muscle (A673) Placenta Colon (HCT116) Thyroid Blood (Karpas-422) Pancreas Pancreas (Panc1) Uterus Thymus Heart
Transcript factors that have rs398019588[chr12:52423472]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52422815 52423528 ZNF143 GTRD no Epithelial (MCF-7) 21545998
chr12 52422815 52423528 ZNF143 GTRD no Epithelial (MCF-7) 108032886
chr12 52422841 52423644 TEF1 GTRD no Bone (Osteoblast) 108032887
chr12 52423192 52423862 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108032888
chr12 52423287 52423937 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21545999
chr12 52423287 52423937 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032889
chr12 52423309 52423573 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546000
chr12 52423309 52423573 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032890
chr12 52423334 52423994 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546001
chr12 52423334 52423994 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032891
chr12 52423356 52423876 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108032892
chr12 52423403 52423799 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546002
chr12 52423403 52423799 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032893
chr12 52423421 52423805 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546003
chr12 52423421 52423805 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032894
chr12 52423430 52423834 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546004
chr12 52423430 52423834 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032895
chr12 52423450 52423980 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546005
chr12 52423450 52423980 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032896
chr12 52423453 52423797 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108032897
chr12 52423462 52423722 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546006
chr12 52423462 52423722 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032898
chr12 52423467 52423482 FOXP1 JASPAR yes 120914104
chr12 52423472 52423484 IRF1 JASPAR yes 120914105
chr12 52423472 52423487 STAT2 JASPAR yes 120914106
Genes associated with rs398019588[chr12:52423472], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 52880958 52887041 - KRT6A ENSG00000205420.6 52887041 457486 Esophagus 0.270819 12090