EnhancerDB
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  3. rs4648477[chr1:3251975]
Enhancers that have rs4648477[chr1:3251975]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3220368 3259315 enh11429
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 3251760 3252019 vista104
VISTA
Transcript factors that have rs4648477[chr1:3251975]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3251963 3251978 TFAP2A JASPAR yes 26281474
chr1 3251963 3251978 TFAP2C JASPAR yes 26281475
chr1 3251963 3251978 TFAP2A JASPAR yes 118218253
chr1 3251963 3251978 TFAP2C JASPAR yes 118218254
chr1 3251965 3251978 TFAP2A JASPAR yes 26281476
chr1 3251965 3251978 TFAP2B JASPAR yes 26281477
chr1 3251965 3251978 TFAP2C JASPAR yes 26281478
chr1 3251965 3251978 TFAP2A JASPAR yes 118218255
chr1 3251965 3251978 TFAP2B JASPAR yes 118218256
chr1 3251965 3251978 TFAP2C JASPAR yes 118218257
chr1 3251965 3251980 TFAP2A JASPAR yes 26281479
chr1 3251965 3251980 TFAP2A JASPAR yes 118218258
chr1 3251966 3251978 TFAP2A JASPAR yes 26281480
chr1 3251966 3251978 TFAP2B JASPAR yes 26281481
chr1 3251966 3251978 TFAP2C JASPAR yes 26281482
chr1 3251966 3251978 TFAP2A JASPAR yes 118218259
chr1 3251966 3251978 TFAP2B JASPAR yes 118218260
chr1 3251966 3251978 TFAP2C JASPAR yes 118218261
chr1 3251966 3251980 PLAG1 JASPAR yes 26281483
chr1 3251966 3251980 PLAG1 JASPAR yes 118218262
Genes associated with rs4648477[chr1:3251975], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More