EnhancerDB
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  3. rs489418[chr1:185528949]
Enhancers that have rs489418[chr1:185528949]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 185522965 185545824 enh816
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Muscle (A673) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Spleen Thymus Stomach
chr1 185528945 185529618 vista4271
VISTA
Transcript factors that have rs489418[chr1:185528949]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 185527979 185529438 ZNF274 GTRD no Bone Marrow (K562) 107852446
chr1 185528801 185529201 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107852447
chr1 185528937 185528952 RUNX2 JASPAR yes 33822182
chr1 185528937 185528952 RUNX2 JASPAR yes 118417644
chr1 185528942 185528960 IRF2 JASPAR yes 33822183
chr1 185528942 185528960 IRF2 JASPAR yes 118417645
chr1 185528943 185528964 IRF1 JASPAR yes 33822184
chr1 185528943 185528964 IRF1 JASPAR yes 118417646
chr1 185528945 185528960 STAT2 JASPAR yes 33822185
chr1 185528945 185528960 STAT2 JASPAR yes 118417647
chr1 185528947 185528959 IRF1 JASPAR yes 33822186
chr1 185528947 185528959 IRF1 JASPAR yes 118417648
chr1 185528947 185528961 IRF7 JASPAR yes 33822187
chr1 185528947 185528961 IRF7 JASPAR yes 118417649
chr1 185528947 185528962 IRF9 JASPAR yes 33822188
chr1 185528947 185528962 IRF9 JASPAR yes 118417650
chr1 185528949 185528955 TCF4 TRANSFAC yes 33822189
chr1 185528949 185528955 TCF4 TRANSFAC yes 118417651
chr1 185528949 185528964 FOXP1 JASPAR yes 33822190
chr1 185528949 185528964 FOXP1 JASPAR yes 118417652
Genes associated with rs489418[chr1:185528949], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More