EnhancerDB
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Enhancers that have rs529427539[chr19:3403834]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3395005 3410358 enh17863
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Stomach
Transcript factors that have rs529427539[chr19:3403834]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3402647 3405571 TCF7L2 GTRD no Colon (HCT116) 21839354
chr19 3402647 3405571 TCF7L2 GTRD no Colon (HCT116) 108366699
chr19 3402647 3405571 TCF7L2 GTRD no Colon (HCT116) 108366700
chr19 3402647 3405571 TCF7L2 GTRD no Colon (HCT116) 108366701
chr19 3403375 3405612 TCF7L2 GTRD no Colon (HCT116) 21839355
chr19 3403375 3405612 TCF7L2 GTRD no Colon (HCT116) 108366702
chr19 3403375 3405612 TCF7L2 GTRD no Colon (HCT116) 108366703
chr19 3403375 3405612 TCF7L2 GTRD no Colon (HCT116) 108366704
chr19 3403464 3405554 TCF7L2 GTRD no Colon (HCT116) 21839356
chr19 3403464 3405554 TCF7L2 GTRD no Colon (HCT116) 108366705
chr19 3403464 3405554 TCF7L2 GTRD no Colon (HCT116) 108366706
chr19 3403464 3405554 TCF7L2 GTRD no Colon (HCT116) 108366707
chr19 3403502 3405348 TCF7L2 GTRD no Colon (HCT116) 21839357
chr19 3403502 3405348 TCF7L2 GTRD no Colon (HCT116) 108366708
chr19 3403502 3405348 TCF7L2 GTRD no Colon (HCT116) 108366709
chr19 3403502 3405348 TCF7L2 GTRD no Colon (HCT116) 108366710
chr19 3403570 3405416 TCF7L2 GTRD no Colon (HCT116) 21839358
chr19 3403570 3405416 TCF7L2 GTRD no Colon (HCT116) 108366711
chr19 3403570 3405416 TCF7L2 GTRD no Colon (HCT116) 108366712
chr19 3403570 3405416 TCF7L2 GTRD no Colon (HCT116) 108366713
chr19 3403648 3405195 TCF7L2 GTRD no Colon (HCT116) 21839359
chr19 3403648 3405195 TCF7L2 GTRD no Colon (HCT116) 108366714
chr19 3403648 3405195 TCF7L2 GTRD no Colon (HCT116) 108366715
chr19 3403648 3405195 TCF7L2 GTRD no Colon (HCT116) 108366716
chr19 3403724 3404940 TCF7L2 GTRD no Colon (HCT116) 21839360
chr19 3403724 3404940 TCF7L2 GTRD no Colon (HCT116) 108366717
chr19 3403724 3404940 TCF7L2 GTRD no Colon (HCT116) 108366718
chr19 3403768 3404404 ZBTB33 GTRD no Lung (A549) 108366719
chr19 3403779 3404510 TCF7L2 GTRD no Colon (HCT116) 21839361
chr19 3403779 3404510 TCF7L2 GTRD no Colon (HCT116) 108366720
chr19 3403815 3403835 RREB1 JASPAR yes 112128669
chr19 3403823 3403837 GLIS2 JASPAR yes 112128670
chr19 3403823 3403837 GLIS3 JASPAR yes 112128671
chr19 3403823 3403837 ZIC1 JASPAR yes 112128672
chr19 3403823 3403838 ZIC3 JASPAR yes 112128673
chr19 3403823 3403838 ZIC4 JASPAR yes 112128674
chr19 3403829 3405338 ZNF274 GTRD no Bone Marrow (K562) 108366721
chr19 3403829 3405338 ZNF274 GTRD no Bone Marrow (K562) 108366722
chr19 3403829 3405338 ZNF274 GTRD no Bone Marrow (K562) 108366723
chr19 3403831 3403850 PAX5 JASPAR yes 112128676
Genes associated with rs529427539[chr19:3403834], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More