EnhancerDB
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  3. rs530041890[chr1:205455663]
Enhancers that have rs530041890[chr1:205455663]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205444631 205456855 enh61954
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Stomach Muscle (A673) Colon (HCT116) Breast Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs530041890[chr1:205455663]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205454847 205456000 ZNF143 GTRD no Epithelial (MCF-7) 21371952
chr1 205454880 205457852 TCF7L2 GTRD no Colon (HCT116) 21371953
chr1 205454890 205455769 ZNF143 GTRD no Epithelial (MCF-7) 21371954
chr1 205455330 205457969 TCF7L2 GTRD no Colon (HCT116) 21371959
chr1 205455489 205457709 TCF7L2 GTRD no Colon (HCT116) 21371960
chr1 205455500 205457642 TCF7L2 GTRD no Colon (HCT116) 21371961
chr1 205455544 205457759 TCF7L2 GTRD no Colon (HCT116) 21371962
chr1 205455663 205455675 PKNOX1 JASPAR yes 34764166
chr1 205455663 205455675 PKNOX2 JASPAR yes 34764167
chr1 205455663 205455675 TGIF1 JASPAR yes 34764168
chr1 205455663 205455675 TGIF2 JASPAR yes 34764169
Genes associated with rs530041890[chr1:205455663], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More