EnhancerDB
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  3. rs530339330[chr16:88340005]
Enhancers that have rs530339330[chr16:88340005]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88327201 88357367 enh16902
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Uterus
Transcript factors that have rs530339330[chr16:88340005]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221908
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221909
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221910
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221932
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221933
chr16 88339563 88343230 TCF7L2 GTRD no Colon (HCT116) 108221946
chr16 88339610 88341034 TCF7L2 GTRD no Colon (HCT116) 108221947
chr16 88339881 88341423 ZNF274 GTRD no Bone Marrow (K562) 108221948
chr16 88339899 88341285 ZNF274 GTRD no Bone Marrow (K562) 108221949
chr16 88339978 88340421 ZNF274 GTRD no Blood (GM12878) 108221950
chr16 88340005 88340013 TBX5 JASPAR yes 12276343
Genes associated with rs530339330[chr16:88340005], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More