EnhancerDB
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  3. rs533328009[chr17:55684264]
Enhancers that have rs533328009[chr17:55684264]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55673238 55692440 enh4492
Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs533328009[chr17:55684264]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55684245 55684265 RREB1 JASPAR yes 54974656
chr17 55684248 55684268 RREB1 JASPAR yes 54974660
chr17 55684252 55684272 RREB1 JASPAR yes 54974661
chr17 55684254 55684264 ZNF740 JASPAR yes 54974662
chr17 55684255 55684265 SP1 JASPAR yes 54974663
chr17 55684255 55684265 ZNF740 JASPAR yes 54974664
chr17 55684256 55684266 SP1 JASPAR yes 54974665
chr17 55684256 55684266 ZNF740 JASPAR yes 54974666
chr17 55684257 55684267 ZNF740 JASPAR yes 54974667
chr17 55684258 55684268 ZNF740 JASPAR yes 54974668
chr17 55684264 55684277 SMAD2 JASPAR yes 54974669
chr17 55684264 55684278 TLX1 JASPAR yes 54974670
Genes associated with rs533328009[chr17:55684264], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More