EnhancerDB
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  3. rs534368912[chr1:10960069]
Enhancers that have rs534368912[chr1:10960069]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 10948885 10972333 enh11498
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Blood (T-cell) Stomach Muscle (A673) Placenta Thyroid Lung (PC-9) Thymus Epithelial (MCF-7)
chr1 10959985 10960148 vista349
VISTA
Transcript factors that have rs534368912[chr1:10960069]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 10959101 10960414 TCF7L2 GTRD no Colon (HCT116) 107802064
chr1 10959814 10960640 ZNF274 GTRD no Bone Marrow (K562) 107802065
chr1 10960062 10960075 TFAP2A JASPAR yes 26758619
chr1 10960062 10960075 TFAP2B JASPAR yes 26758620
chr1 10960062 10960075 TFAP2C JASPAR yes 26758621
chr1 10960062 10960075 TFAP2A JASPAR yes 118229752
chr1 10960062 10960075 TFAP2B JASPAR yes 118229753
chr1 10960062 10960075 TFAP2C JASPAR yes 118229754
chr1 10960062 10960076 EBF1 JASPAR yes 26758622
chr1 10960062 10960076 EBF1 JASPAR yes 118229755
chr1 10960069 10960074 TFAP2A TRANSFAC yes 26758623
chr1 10960069 10960074 TFAP2A TRANSFAC yes 118229756
chr1 10960069 10960075 MZF1 JASPAR yes 26758624
chr1 10960069 10960075 MZF1 JASPAR yes 118229757
Genes associated with rs534368912[chr1:10960069], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More