EnhancerDB
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  3. rs534549436[chr17:53515901]
Enhancers that have rs534549436[chr17:53515901]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs534549436[chr17:53515901]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53515889 53515909 RREB1 JASPAR yes 54850693
chr17 53515892 53515912 RREB1 JASPAR yes 54850694
chr17 53515893 53515903 SP1 JASPAR yes 54850695
chr17 53515893 53515913 RREB1 JASPAR yes 54850696
chr17 53515893 53515914 ZNF263 JASPAR yes 54850697
chr17 53515894 53515904 SP1 JASPAR yes 54850698
chr17 53515894 53515915 ZNF263 JASPAR yes 54850699
chr17 53515897 53515902 SP1 TRANSFAC yes 54850700
chr17 53515900 53515914 PLAG1 JASPAR yes 54850701
chr17 53515901 53515911 SP1 JASPAR yes 54850702
Genes associated with rs534549436[chr17:53515901], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More