EnhancerDB
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  3. rs534648053[chr5:171606592]
Enhancers that have rs534648053[chr5:171606592]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171565199 171613524 enh8878
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
chr5 171606484 171606964 vista50133
VISTA
Transcript factors that have rs534648053[chr5:171606592]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171605887 171607173 POLR2A UCSC Txn Factor no Conserved 108537440
chr5 171605887 171607173 POLR2A UCSC Txn Factor no Conserved 108537441
chr5 171606387 171606900 RUNX3 UCSC Txn Factor no Conserved 108537442
chr5 171606585 171606600 TFAP2C JASPAR yes 67772052
chr5 171606585 171606600 TFAP2C JASPAR yes 70761009
chr5 171606591 171606612 REST JASPAR yes 67772053
chr5 171606591 171606612 REST JASPAR yes 70761010
Genes associated with rs534648053[chr5:171606592], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More