EnhancerDB
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  3. rs534966629[chr1:28574460]
Enhancers that have rs534966629[chr1:28574460]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28563689 28580455 enh185
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Blood (OCI-LY7) Placenta Blood (Karpas-422) Muscle (Myoblast) Pancreas Uterus Thymus Heart
Transcript factors that have rs534966629[chr1:28574460]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28574449 28574460 HOXA10 JASPAR yes 27753746
chr1 28574450 28574460 HOXA13 JASPAR yes 27753748
chr1 28574450 28574460 HOXD13 JASPAR yes 27753749
chr1 28574450 28574471 IRF1 JASPAR yes 27753750
chr1 28574455 28574470 FOXP1 JASPAR yes 27753751
chr1 28574455 28574476 IRF1 JASPAR yes 27753752
chr1 28574456 28574477 IRF1 JASPAR yes 27753753
chr1 28574460 28574472 IRF1 JASPAR yes 27753754
chr1 28574460 28574475 STAT2 JASPAR yes 27753755
Genes associated with rs534966629[chr1:28574460], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More