EnhancerDB
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  3. rs536678009[chr1:172879395]
Enhancers that have rs536678009[chr1:172879395]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs536678009[chr1:172879395]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172879027 172879491 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21350432
chr1 172879027 172879491 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107846249
chr1 172879083 172879407 CEBPB UCSC Txn Factor no Conserved 107846250
chr1 172879083 172879407 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107846251
chr1 172879126 172879502 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21350435
chr1 172879126 172879502 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107846254
chr1 172879395 172879400 GATA2 JASPAR yes 33164875
Genes associated with rs536678009[chr1:172879395], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More