EnhancerDB
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  3. rs538534427[chr1:52006674]
Enhancers that have rs538534427[chr1:52006674]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 51998705 52011795 enh359
Prostate (PC-3) Cervix (HeLa-S3) Stomach Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Uterus Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs538534427[chr1:52006674]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52006671 52006680 ZEB1 JASPAR yes 28847786
chr1 52006672 52006682 ID4 JASPAR yes 28847787
chr1 52006672 52006682 NHLH1 JASPAR yes 28847788
chr1 52006672 52006682 TCF3 JASPAR yes 28847789
chr1 52006672 52006682 TCF4 JASPAR yes 28847790
chr1 52006673 52006682 SNAI2 JASPAR yes 28847791
chr1 52006674 52006679 USF2 TRANSFAC yes 28847792
Genes associated with rs538534427[chr1:52006674], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More